ConfiguringMacOSX - Revision history

78.52.194.159: /* Step 8: Install Visit Carpet plugin */

2010-09-25T09:13:40Z

‎Step 8: Install Visit Carpet plugin

78.52.194.159 at 09:09, 25 September 2010

2010-09-25T09:09:37Z

78.52.194.159: /* Step 1: Install Xcode */

2010-09-25T09:06:29Z

‎Step 1: Install Xcode

68.105.150.101: /* Step 5: Configure Cactus */

2010-09-23T22:59:32Z

‎Step 5: Configure Cactus

68.105.150.101: /* Step 11: Install Globus Tools (gsissh, GridFTP, myproxy, etc.) */

2010-09-23T22:58:19Z

‎Step 11: Install Globus Tools (gsissh, GridFTP, myproxy, etc.)

68.105.150.101: /* Step 6: Install Visit Carpet plugin */

2010-09-23T22:58:00Z

‎Step 6: Install Visit Carpet plugin

68.105.150.101: /* Step 5: Install Visit */

2010-09-23T22:57:49Z

‎Step 5: Install Visit

68.105.150.101: /* Step 4: Install gnuplot */

2010-09-23T22:57:38Z

‎Step 4: Install gnuplot

68.105.150.101: /* Step 10: Configure Cactus */

2010-09-23T22:57:26Z

‎Step 10: Configure Cactus

68.105.150.101: /* Step 9: Install a good compiler */

2010-09-23T22:54:15Z

‎Step 9: Install a good compiler

@@ Line 126: / Line 126: @@
 == Step 8: Install Visit Carpet plugin ==
-To effectively read the data output by Carpet, Visit requires a plugin. The source code for the plugin may be checked out from the Cactus CVS repository (using password 'anon'):
+To effectively read the data output by Carpet, Visit requires a plugin. The source code for the plugin may be checked out from the Cactus SVN repository
-  cvs -d :pserver:cvs_anon@cvs.cactuscode.org:/cactus login
+  svn co http://svn.cactuscode.org/VizTools/CarpetHDF5/trunk/
 The plugin requires the HDF5 library, but cannot use the previously installed version for two reasons:
@@ Line 139: / Line 138: @@
 * Download the source for [http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.1/src/hdf5-1.8.1.tar.gz HDF5 1.8.1] into VizTools/visitCarpetHDF5.
 * Extract the source
-  cd VizTools/visitCarpetHDF5
+  cd CarpetHDF5
   tar zxvf hdf5-1.8.1.tar.gz

@@ Line 9: / Line 9: @@
 == Step 2: Install MacPorts ==
-MacPorts allows you to install extra libraries and tools not included with OS X. Download and install the version for your version of OS X.
+[http://www.macports.org/ MacPorts] allows you to install extra libraries and tools not included with OS X. [http://www.macports.org/install.php Download] and install the version for your version of OS X.
 == Step 3: Install git ==
@@ Line 117: / Line 117: @@
 == Step 7: Install Visit ==
-Visit is used for visualizing the 3D data produced in simulations. Download the "Mac OS X - Intel" executable and "Visit install script" from here. Make the install script executable:
+Visit is used for visualizing the 3D data produced in simulations. Download the "Mac OS X - Intel" executable and "Visit install script" from [https://wci.llnl.gov/codes/visit/executables.html here]. Make the install script executable:
   chmod +x visit-install
 then execute it to install visit
@@ Line 137: / Line 137: @@
 For this reason, it is best to compile a usable version of HDF5 by hand:
-* Download the source for HDF5 1.8.1 into VizTools/visitCarpetHDF5.
+* Download the source for [http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.1/src/hdf5-1.8.1.tar.gz HDF5 1.8.1] into VizTools/visitCarpetHDF5.
 * Extract the source
   cd VizTools/visitCarpetHDF5
@@ Line 158: / Line 158: @@
 In order to access any of the TeraGrid machines (eg. Kraken), you will need to first install the Global Tools. These must currently be compiled from source as follows:
-* Download the source package.
+* Download the [http://www.globus.org/toolkit/downloads/5.0.0/#source source package].
 * Extract the files:
   tar xjvf gt5.0.0-all-source-installer.tar.bz2

@@ Line 5: / Line 5: @@
 == Step 1: Install Xcode ==
-Download and install the latest version of Xcode from Apple. The version"Xcode for Mac-only Development" is sufficient.
+Download and install the latest version of [http://developer.apple.com/technology/xcode.html Xcode] from Apple. The version"Xcode for Mac-only Development" is sufficient.
 == Step 2: Install MacPorts ==

←Older revision		Revision as of 22:59, 23 September 2010
Line 105:		Line 105:

	X_LIB_DIR = /usr/X11R6/lib		X_LIB_DIR = /usr/X11R6/lib
		+
		+
		+
		+	Congratulations, you can now build and run Cactus. To visualise output and to access other machines, continue.

	== Step 6: Install gnuplot ==		== Step 6: Install gnuplot ==

@@ Line 150: / Line 150: @@
 In the window that appears, select the Makefile tab. Ensure the CXXFLAGS includes -I./hdf5-1.8.1/hdf5/include -arch i386 and the LDFLAGS include -L./hdf5-1.8.1/hdf5/lib -arch i386, then save and quit. The plugin should now compile and install a location where it can be found by Visit.
-== Step 11: Install Globus Tools (gsissh, GridFTP, myproxy, etc.) ==
+== Step 9: Install Globus Tools (gsissh, GridFTP, myproxy, etc.) ==
 In order to access any of the TeraGrid machines (eg. Kraken), you will need to first install the Global Tools. These must currently be compiled from source as follows:
@@ Line 156: / Line 156: @@
 * Download the source package.
 * Extract the files:
-  tar zxvf gt5.0.0-all-source-installer.tar.bz2
+  tar xjvf gt5.0.0-all-source-installer.tar.bz2
 * cd to the directory where you extract the files and build gsi-ssh, GridFTP, myproxy
   ./configure --prefix=/usr/local

@@ Line 120: / Line 120: @@
 where 1.12.1 is the version of Visit you downloaded. Add /usr/local/visit/bin to your $PATH so that you can run Visit by just typing visit on the command line.
-== Step 6: Install Visit Carpet plugin ==
+== Step 8: Install Visit Carpet plugin ==
 To effectively read the data output by Carpet, Visit requires a plugin. The source code for the plugin may be checked out from the Cactus CVS repository (using password 'anon'):

@@ Line 111: / Line 111: @@
   sudo port install gnuplot
-== Step 5: Install Visit ==
+== Step 7: Install Visit ==
 Visit is used for visualizing the 3D data produced in simulations. Download the "Mac OS X - Intel" executable and "Visit install script" from here. Make the install script executable:

@@ Line 106: / Line 106: @@
   X_LIB_DIR = /usr/X11R6/lib
-== Step 4: Install gnuplot ==
+== Step 6: Install gnuplot ==
 gnuplot can be easily installed using MacPorts:

@@ Line 20: / Line 20: @@
   sudo port install gcc45
-== Step 10: Configure Cactus ==
+== Step 5: Configure Cactus ==
 In order for Cactus to find all of the installed libraries, make sure the your optionlist looks like the following (this is based off the version included in simfactory):
@@ Line 28: / Line 28: @@
   # Whenever this version string changes, the application is configured
   # and rebuilt from scratch
-  VERSION = 2009-11-25
+  VERSION = 2010-09-23
   CPP = cpp
   FPP = cpp
-  CC  = gcc
+  CC  = gcc-mp-4.5
-  CXX = g++
+  CXX = g++-mp-4.5
-  F77 = gfortran-mp-4.3
+  F77 = gfortran-mp-4.5
-  F90 = gfortran-mp-4.3
+  F90 = gfortran-mp-4.5
   CPPFLAGS = -DMPICH_IGNORE_CXX_SEEK
   FPPFLAGS = -traditional
   CFLAGS   = -g3 -fshow-column -mmacosx-version-min=10.5 -m128bit-long-double -std=gnu99
-  CXXFLAGS = -g3 -fshow-column -mmacosx-version-min=10.5 -m128bit-long-double -I/opt/local/include
+  CXXFLAGS = -g3 -fshow-column -mmacosx-version-min=10.5 -m128bit-long-double -std=gnu++0x
   F77FLAGS = -g3 -fshow-column -mmacosx-version-min=10.5 -m128bit-long-double -fcray-pointer
   F90FLAGS = -g3 -fshow-column -mmacosx-version-min=10.5 -m128bit-long-double -fcray-pointer
-  LDFLAGS = /System/Library/Frameworks/vecLib.framework/vecLib -L/opt/local/lib/gcc43 -lgfortran
+  LDFLAGS = /System/Library/Frameworks/vecLib.framework/vecLib -L/opt/local/lib/gcc45 -lgfortran
   C_LINE_DIRECTIVES = yes
@@ Line 63: / Line 59: @@
   F90_DEBUG_FLAGS = -fbounds-check -ftrapv -fstack-protector-all
   OPTIMISE           = yes
-  CPP_OPTIMISE_FLAGS = # -DCARPET_OPTIMISE -DNDEBUG
+  CPP_OPTIMISE_FLAGS =
-  FPP_OPTIMISE_FLAGS = # -DCARPET_OPTIMISE -DNDEBUG
+  FPP_OPTIMISE_FLAGS =
   C_OPTIMISE_FLAGS   = -O2
   CXX_OPTIMISE_FLAGS = -O2
@@ Line 83: / Line 75: @@
   F90_PROFILE_FLAGS = -pg
-  # -Wuninitialized is not supported without -O
+  OPENMP           = yes
-  WARN           = no
+ CPP_OPENMP_FLAGS = -fopenmp
-  #CPP_WARN_FLAGS = -Wall
+ FPP_OPENMP_FLAGS = -fopenmp
-  #FPP_WARN_FLAGS = -Wall
+ C_OPENMP_FLAGS   = -fopenmp
-  #C_WARN_FLAGS   = -Wall
+ CXX_OPENMP_FLAGS = -fopenmp
-  #CXX_WARN_FLAGS = -Wall
+ F77_OPENMP_FLAGS = -fopenmp
-  #F77_WARN_FLAGS = -Wall
+ F90_OPENMP_FLAGS = -fopenmp
-  #F90_WARN_FLAGS = -Wall
@@ Line 97: / Line 96: @@
   BLAS_LIBS = gfortran
   LAPACK_DIR  = /System/Library/Frameworks/vecLib.framework
   LAPACK_LIBS =
@@ Line 117: / Line 101: @@
   MPI              = OpenMPI
   MPI_LIBS         = mpi
   PTHREADS = yes
   X_LIB_DIR = /usr/X11R6/lib

@@ Line 16: / Line 16: @@
   sudo port install git-core
-== Step 9: Install a good compiler ==
+== Step 4: Install a good compiler ==
   sudo port install gcc45