Difference between revisions of "Compiling the Einstein Toolkit"
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===HDF5=== | ===HDF5=== | ||
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+ | If no HDF5 options are given, then HDF5 will be used if it can be automatically detected from standard locations, and will be built from a source package in the HDF5 thorn if not. Alternatively you can specify HDF5_DIR to point to an HF5 installation, for example | ||
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+ | <pre> | ||
+ | HDF5_DIR = /usr/local/hdf5-1.9.1 | ||
+ | </pre> | ||
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+ | The following options disable support for Fortran and C++ when building HDF5, as it is not required by the Einstein Toolkit. | ||
<pre> | <pre> |
Revision as of 02:03, 6 June 2013
The recommended way to compile the Einstein Toolkit is to use the Simulation Factory ("SimFactory").
Contents
Supercomputers
SimFactory comes with support for many of the large supercomputers. If you are compiling on one of these, it should be sufficient to run
sim build --thornlist path/to/thornlist.th
Generic operating systems
SimFactory also contains general support for specific operating systems, including Mac OS, Ubuntu, and Scientific Linux. To build a configuration, you need to determine the correct optionlist to use from simfactory/mdb/optionlists. You can then choose the optionlist to use on the "sim build" command line:
sim build --thornlist path/to/thornlist.th --optionlist <optionlist-name>
Writing your own optionlist
If your operating system is not supported, you will need to write your own optionlist. The options provided by Cactus are described in the Cactus documentation. This page provides additional information and recommendations.
The following is based on the ubuntu.cfg optionlist.
VERSION = 2012-09-28
Cactus will reconfigure when the VERSION string changes.
Compilers
CPP = cpp FPP = cpp CC = gcc CXX = g++ F77 = gfortran F90 = gfortran
The C and Fortran preprocessors, and the C, C++, Fortran 77 and Fortran 90 compilers, are specified by these options. You can specify a full path if the compiler you want to use is not available on your default path. Note that it is strongly recommended to use compilers from the same family; e.g. don't mix the Intel C Compiler with the GNU Fortran Compiler.
Compilation and linking flags
CPPFLAGS = -DMPICH_IGNORE_CXX_SEEK FPPFLAGS = -traditional CFLAGS = -g3 -march=native -std=gnu99 CXXFLAGS = -g3 -march=native -std=gnu++0x F77FLAGS = -g3 -march=native -fcray-pointer -m128bit-long-double -ffixed-line-length-none F90FLAGS = -g3 -march=native -fcray-pointer -m128bit-long-double -ffixed-line-length-none LDFLAGS = -rdynamic
Cactus thorns can be written in C or C++. Cactus supports the C99 and C++0x standards respectively. Additionally, the Einstein Toolkit requires the GNU extensions provided by the options gnu99 / gnu++0x. If these extensions are not available, some Einstein Toolkit thorns will not compile.
-g3 ensures that debugging symbols are included in the object files. It is not necessary to set DEBUG = yes to get debugging symbols.
The rdynamic linker flag ensures that additional information is available in the executable for producing backtraces at runtime in the event of an internal error.
LIBDIRS = C_LINE_DIRECTIVES = yes F_LINE_DIRECTIVES = yes
Debugging
DEBUG = no CPP_DEBUG_FLAGS = -DCARPET_DEBUG FPP_DEBUG_FLAGS = -DCARPET_DEBUG C_DEBUG_FLAGS = -O0 CXX_DEBUG_FLAGS = -O0 F77_DEBUG_FLAGS = -O0 F90_DEBUG_FLAGS = -O0
When DEBUG = yes is set (e.g. on the make command line or with SimFactory's --debug option), these debug flags are used. The intention here is to disable optimisation and enable additional code which may slow down execution but makes the code easier to debug.
Optimisation
OPTIMISE = yes CPP_OPTIMISE_FLAGS = -DKRANC_VECTORS # -DCARPET_OPTIMISE -DNDEBUG FPP_OPTIMISE_FLAGS = # -DCARPET_OPTIMISE -DNDEBUG C_OPTIMISE_FLAGS = -O2 -ffast-math CXX_OPTIMISE_FLAGS = -O2 -ffast-math F77_OPTIMISE_FLAGS = -O2 -ffast-math F90_OPTIMISE_FLAGS = -O2 -ffast-math
Profiling
PROFILE = no CPP_PROFILE_FLAGS = FPP_PROFILE_FLAGS = C_PROFILE_FLAGS = -pg CXX_PROFILE_FLAGS = -pg F77_PROFILE_FLAGS = -pg F90_PROFILE_FLAGS = -pg
OpenMP
OPENMP = yes CPP_OPENMP_FLAGS = -fopenmp FPP_OPENMP_FLAGS = -fopenmp C_OPENMP_FLAGS = -fopenmp CXX_OPENMP_FLAGS = -fopenmp F77_OPENMP_FLAGS = -fopenmp F90_OPENMP_FLAGS = -fopenmp
Warnings
WARN = yes CPP_WARN_FLAGS = -Wall FPP_WARN_FLAGS = -Wall C_WARN_FLAGS = -Wall CXX_WARN_FLAGS = -Wall F77_WARN_FLAGS = -Wall F90_WARN_FLAGS = -Wall
HDF5
If no HDF5 options are given, then HDF5 will be used if it can be automatically detected from standard locations, and will be built from a source package in the HDF5 thorn if not. Alternatively you can specify HDF5_DIR to point to an HF5 installation, for example
HDF5_DIR = /usr/local/hdf5-1.9.1
The following options disable support for Fortran and C++ when building HDF5, as it is not required by the Einstein Toolkit.
HDF5_ENABLE_FORTRAN = no HDF5_ENABLE_CXX = no
MPI
MPI_DIR = /usr MPI_INC_DIRS = /usr/include/mpich2 MPI_LIB_DIRS = /usr/lib MPI_LIBS = mpich fmpich mpl
Others
PTHREADS = yes